PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0021700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 267aa    MW: 28324.2 Da    PI: 7.238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0021700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.39.9e-1751100255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR +iN++f++L++l+P++    ++K +Ka+ L +++eY++ Lq
  Spipo5G0021700  51 RSKHSATEQRRRTKINDRFQTLKDLVPPN----DQKRDKASLLLEVIEYVQLLQ 100
                     899*************************9....9*****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-2146110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1847110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.8634999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-1651104No hitNo description
PfamPF000102.2E-1451100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-1355105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVTAARSNGG FADGEDDIFV KEEFSHKEST VNVDVGNTSD NNNDQKPSTP RSKHSATEQR  60
RRTKINDRFQ TLKDLVPPND QKRDKASLLL EVIEYVQLLQ DKVQKYESSS SSCPGRTQDG  120
AKLTPWRARQ DSAAGAADHS QSHHHPPPAA PVLPLGGAGA GAADPESGGV ASQQQPLRWS  180
PSGGNDEHAP PADEGLSNLS TMYSQGLLAR LTRAMEGSGV DLTRASLAVR VNLGRRATTL  240
PVGPTAEGPT EPPSARPGKR LKPEAS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788923.12e-55PREDICTED: transcription factor BIM2 isoform X4
TrEMBLA0A0K9PCS11e-51A0A0K9PCS1_Z
STRINGOB08G25940.17e-47(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-32BES1-interacting Myc-like protein 2